If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ), 'gf_id' => 'HOM05D000905', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000905' ), 'data_identifier' => 'HOM05D000905', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000905', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '661', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09660' => 'bna', 'A01p18210' => 'bna', 'A01p28880' => 'bna', 'A05p19900' => 'bna', 'A06p29270' => 'bna', 'A08p27830' => 'bna', 'A09p07770' => 'bna', 'A09p40650' => 'bna', 'Aa31LG10G3310' => 'aar', 'Aa31LG11G1050' => 'aar', 'Aa31LG2G10340' => 'aar', 'Aa31LG5G10340' => 'aar', 'Aa31LG7G7980' => 'aar', 'Aa31sc130G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4813' => 'aag', 'Actinidia04951' => 'ach', 'Actinidia10721' => 'ach', 'Actinidia10722' => 'ach', 'Actinidia14985' => 'ach', 'Actinidia19070' => 'ach', 'Actinidia24655' => 'ach', 'Actinidia29981' => 'ach', 'Actinidia34967' => 'ach', 'Actinidia35329' => 'ach', 'Actinidia37688' => 'ach', 'Actinidia38531' => 'ach', 'Ah.02g112810' => 'amhyb', 'Ah.02g131690' => 'amhyb', 'Ah.03g132100' => 'amhyb', 'Ah.04g165690' => 'amhyb', 'Ah.09g234420' => 'amhyb', 'Ah.10g032720' => 'amhyb', 'Ah.11g046330' => 'amhyb', 'Ah.15g098830' => 'amhyb', 'AL1G38240' => 'aly', 'AL1G58620' => 'aly', 'AL2G16920' => 'aly', 'AL3G44100' => 'aly', 'AL7G17770' => 'aly', 'AL7G18470' => 'aly', 'AL7G25740' => 'aly', 'AL8G39480' => 'aly', 'Aqoxy1G03293' => 'aox', 'Aqoxy3G00862' => 'aox', 'Aqoxy3G03163' => 'aox', 'Aqoxy4G01942' => 'aox', 'Aqoxy4G02530_Aqoxy4G02531' => 'aox', 'Aqoxy7G02654' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6S4AXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7RM2L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83EP2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F9W5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ21JL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI466Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS6ADN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0FVBM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9TITG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SP0CEZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW4R6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1ZA79' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3FQDK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSG4IS' => 'arhy', 'AT1G27210' => 'ath', 'AT1G50890' => 'ath', 'AT1G59850' => 'ath', 'AT2G07170' => 'ath', 'AT4G27060' => 'ath', 'AT5G62580' => 'ath', 'ATR0626G346' => 'atr', 'ATR0752G147' => 'atr', 'ATR1128G090' => 'atr', 'Atru.chr1.2068' => 'acertr', 'Atru.chr11.1924' => 'acertr', 'Atru.chr2.3279' => 'acertr', 'Atru.chr5.2812' => 'acertr', 'Atru.chr7.1006' => 'acertr', 'Atru.chr9.2382' => 'acertr', 'AUR62008301' => 'cqu', 'AUR62015708' => 'cqu', 'AUR62020498' => 'cqu', 'AUR62020728' => 'cqu', 'AUR62026530' => 'cqu', 'AUR62027985' => 'cqu', 'AUR62031063' => 'cqu', 'AUR62038658' => 'cqu', 'AUR62039451' => 'cqu', 'AUR62043546' => 'cqu', 'BcaB01g01922' => 'bca', 'BcaB02g09659' => 'bca', 'BcaB02g11191' => 'bca', 'BcaB03g11971' => 'bca', 'BcaB04g20235' => 'bca', 'BcaB05g22314' => 'bca', 'BcaB07g32398' => 'bca', 'BcaC01g00319' => 'bca', 'BcaC01g02490' => 'bca', 'BcaC03g18569' => 'bca', 'BcaC04g23405' => 'bca', 'BcaC05g26331' => 'bca', 'BcaC05g27389' => 'bca', 'BcaC06g31797' => 'bca', 'BcaC07g39240' => 'bca', 'BcaC09g49454' => 'bca', 'BcaC09g49831' => 'bca', 'BcaC09g50620' => 'bca', 'BcaC09g50621' => 'bca', 'BcaC09g51628' => 'bca', 'BcaNung00077' => 'bca', 'BcaNung01389' => 'bca', 'BcaNung02712' => 'bca', 'BcaNung06339' => 'bca', 'BcaNung07387' => 'bca', 'BolC1t01092H' => 'bol', 'BolC1t02254H' => 'bol', 'BolC1t03616H' => 'bol', 'BolC2t07592H' => 'bol', 'BolC3t18679H' => 'bol', 'BolC5t31050H' => 'bol', 'BolC5t32049H' => 'bol', 'BolC8t49879H' => 'bol', 'BolC9t53273H' => 'bol', 'BolC9t53778H' => 'bol', 'BraA01t00909Z' => 'bra', 'BraA01t01776Z' => 'bra', 'BraA01t03021Z' => 'bra', 'BraA05t20895Z' => 'bra', 'BraA06t25883Z' => 'bra', 'BraA06t26477Z' => 'bra', 'BraA07t28158Z' => 'bra', 'BraA07t28159Z' => 'bra', 'BraA08t34715Z' => 'bra', 'BraA09t36425Z' => 'bra', 'BraA09t39560Z' => 'bra', 'C01p11270' => 'bna', 'C01p23210' => 'bna', 'C01p32490' => 'bna', 'C01p32500' => 'bna', 'C01p36550' => 'bna', 'C02p14650' => 'bna', 'C03p64210' => 'bna', 'C05p23410' => 'bna', 'C05p33240' => 'bna', 'C08p22410' => 'bna', 'C09p08670' => 'bna', 'CAN.G1781.8' => 'can', 'CAN.G549.1' => 'can', 'CAN.G853.34' => 'can', 'CAN.G86.7' => 'can', 'CANSAT11G2225' => 'cansat', 'CANSAT80G0025' => 'cansat', 'CANSAT80G1045' => 'cansat', 'CARHR024630' => 'chi', 'CARHR040930' => 'chi', 'CARHR053240' => 'chi', 'CARHR104000' => 'chi', 'CARHR234710' => 'chi', 'CARHR276370' => 'chi', 'Carub.0001s2375' => 'cru', 'Carub.0001s3984' => 'cru', 'Carub.0002s0541' => 'cru', 'Carub.0007s1379' => 'cru', 'Carub.0008s2327' => 'cru', 'Carub.0013s0002' => 'cru', 'Ca_05077_v3' => 'car', 'Ca_14811_v3' => 'car', 'Ca_21875_v3' => 'car', 'CBR_g12727' => 'cbr', 'Cc04_g16160' => 'ccan', 'Cc05_g13520' => 'ccan', 'Cc06_g23870' => 'ccan', 'Cc06_g23880' => 'ccan', 'Cc11_g13960' => 'ccan', 'CDE01G0363' => 'cde', 'CDE02G4794' => 'cde', 'CDE04G0438' => 'cde', 'CDE04G1194' => 'cde', 'CDE05G1758' => 'cde', 'CDE05G2004' => 'cde', 'CDE05G2062' => 'cde', 'CDE06G2660' => 'cde', 'CDE07G0206' => 'cde', 'CDE07G0567' => 'cde', 'CDE07G0595' => 'cde', 'CDE12G0665' => 'cde', 'CDE12G0721' => 'cde', 'Cfa009082' => 'cfa', 'Cfa020384' => 'cfa', 'Cfa021997' => 'cfa', 'Ciclev10007404m.g' => 'ccl', 'Ciclev10007456m.g' => 'ccl', 'Ciclev10010612m.g' => 'ccl', 'Ciclev10019374m.g' => 'ccl', 'Ciclev10030884m.g' => 'ccl', 'CiPaw.05G144200' => 'cil', 'CiPaw.11G033800' => 'cil', 'CiPaw.11G187300' => 'cil', 'CiPaw.12G128100' => 'cil', 'CiPaw.15G161600' => 'cil', 'ClCG03G011840' => 'cla', 'ClCG05G014420' => 'cla', 'ClCG06G016620' => 'cla', 'ClCG08G009110' => 'cla', 'COL.COLO4_04223' => 'col', 'COL.COLO4_06603' => 'col', 'COL.COLO4_09633' => 'col', 'COL.COLO4_36268' => 'col', 'Cpa.g.sc207.17' => 'cpa', 'Cpa.g.sc35.15' => 'cpa', 'Cpa.g.sc5.317' => 'cpa', 'Cpa.g.sc97.34' => 'cpa', 'Cre03.g178700' => 'cre', 'CsaV3_1G001890' => 'csa', 'CsaV3_1G044050' => 'csa', 'CsaV3_3G023290' => 'csa', 'CsaV3_6G036020' => 'csa', 'CSS0003768' => 'camsi', 'CSS0005619' => 'camsi', 'CSS0015033' => 'camsi', 'CSS0020935' => 'camsi', 'CSS0027929' => 'camsi', 'CSS0029322' => 'camsi', 'CSS0030973' => 'camsi', 'CSS0032748' => 'camsi', 'CSS0043302' => 'camsi', 'CSS0049685' => 'camsi', 'DCAR_000362' => 'dca', 'DCAR_014584' => 'dca', 'DCAR_016515' => 'dca', 'DCAR_022552' => 'dca', 'DCAR_026096' => 'dca', 'Dinv02654' => 'din', 'Dinv12618' => 'din', 'Dinv13123' => 'din', 'Dinv22280' => 'din', 'Dinv24926' => 'din', 'Dinv24927' => 'din', 'Dinv26483' => 'din', 'Dinv31138' => 'din', 'Dinv40736' => 'din', 'Duzib084G1339' => 'dzi', 'Duzib150G0956' => 'dzi', 'Duzib170G0897' => 'dzi', 'Duzib205G0409' => 'dzi', 'Duzib212G0369' => 'dzi', 'Duzib248G0481' => 'dzi', 'Duzib251G0067' => 'dzi', 'Duzib268G0375' => 'dzi', 'Duzib268G1675' => 'dzi', 'ECA232G2934' => 'eca', 'ECA234G1249' => 'eca', 'ECA234G3957' => 'eca', 'ECA236G3325' => 'eca', 'ECA236G5048' => 'eca', 'ECA246G4572' => 'eca', 'ECA246G4761' => 'eca', 'EL10Ac2g03625' => 'bvu', 'EL10Ac4g07897' => 'bvu', 'EL10Ac5g10862' => 'bvu', 'EL10Ac6g13091' => 'bvu', 'Eucgr.B03382' => 'egr', 'Eucgr.C00061' => 'egr', 'Eucgr.F00965' => 'egr', 'Eucgr.K02894' => 'egr', 'FAN01G1846' => 'fan', 'FAN04G1724' => 'fan', 'FAN07G0268' => 'fan', 'FAN07G1998' => 'fan', 'FAN08G2607' => 'fan', 'FAN11G2009' => 'fan', 'FAN12G0461' => 'fan', 'FAN12G3395' => 'fan', 'FAN13G0029' => 'fan', 'FAN16G1780' => 'fan', 'FAN17G0320' => 'fan', 'FAN17G0732' => 'fan', 'FAN18G4018' => 'fan', 'FAN21G4003' => 'fan', 'FAN22G1905' => 'fan', 'FAN25G2510' => 'fan', 'FvH4_3g22240' => 'fve', 'FvH4_4g05970' => 'fve', 'FvH4_4g35310' => 'fve', 'FvH4_5g16200' => 'fve', 'Glyma.01G001200' => 'gma', 'Glyma.01G038400' => 'gma', 'Glyma.02G026600' => 'gma', 'Glyma.04G149700' => 'gma', 'Glyma.04G177600' => 'gma', 'Glyma.05G032600' => 'gma', 'Glyma.06G187500' => 'gma', 'Glyma.08G313200' => 'gma', 'Glyma.09G117950' => 'gma', 'Glyma.17G094100' => 'gma', 'Glyma.18G101400' => 'gma', 'Gohir.A01G078000' => 'ghi', 'Gohir.A03G076200' => 'ghi', 'Gohir.A03G144400' => 'ghi', 'Gohir.A04G018700' => 'ghi', 'Gohir.A05G319800' => 'ghi', 'Gohir.A06G077950' => 'ghi', 'Gohir.A08G015700' => 'ghi', 'Gohir.A12G157450' => 'ghi', 'Gohir.A13G139000' => 'ghi', 'Gohir.D01G065100' => 'ghi', 'Gohir.D02G167500' => 'ghi', 'Gohir.D03G089500' => 'ghi', 'Gohir.D03G108700' => 'ghi', 'Gohir.D05G322100' => 'ghi', 'Gohir.D05G367300' => 'ghi', 'Gohir.D07G224950' => 'ghi', 'Gohir.D08G026000' => 'ghi', 'Gohir.D13G143800' => 'ghi', 'Gorai.002G086800' => 'gra', 'Gorai.003G071900' => 'gra', 'Gorai.004G022300' => 'gra', 'Gorai.005G188000' => 'gra', 'Gorai.009G345700' => 'gra', 'Gorai.009G434900' => 'gra', 'Gorai.013G160800' => 'gra', 'GSVIVG01007847001' => 'vvi', 'GSVIVG01020135001' => 'vvi', 'GSVIVG01022178001' => 'vvi', 'GSVIVG01032268001' => 'vvi', 'GSVIVG01037609001' => 'vvi', 'HanXRQChr05g0151461' => 'han', 'HanXRQChr08g0217991' => 'han', 'HanXRQChr08g0218001' => 'han', 'HanXRQChr08g0233981' => 'han', 'HanXRQChr08g0235371' => 'han', 'HanXRQChr09g0271591' => 'han', 'HanXRQChr11g0336261' => 'han', 'HanXRQChr12g0358601' => 'han', 'HanXRQChr15g0463861' => 'han', 'HanXRQChr16g0503481' => 'han', 'HanXRQChr17g0570461' => 'han', 'Haze_07420' => 'cav', 'Haze_09648' => 'cav', 'Haze_12114' => 'cav', 'Haze_19092' => 'cav', 'Hma1.2p1_0000F.1_g000830' => 'hma', 'Hma1.2p1_0002F.1_g002960' => 'hma', 'Hma1.2p1_0289F.1_g114530' => 'hma', 'Hma1.2p1_0575F.1_g181760' => 'hma', 'Hma1.2p1_0938F.1_g239205' => 'hma', 'Hma1.2p1_0938F.1_g239210' => 'hma', 'Hma1.2p1_1704F.1_g298330' => 'hma', 'Hma1.2p1_2827F.1_g329130' => 'hma', 'Hma1.2p1_2875F.1_g329760' => 'hma', 'HPP92_004720' => 'vpl', 'HPP92_004721' => 'vpl', 'HPP92_008709' => 'vpl', 'HPP92_008710' => 'vpl', 'HPP92_017339' => 'vpl', 'HPP92_017355' => 'vpl', 'HPP92_017606' => 'vpl', 'Hund02096' => 'sun', 'Hund02702' => 'sun', 'Hund05934' => 'sun', 'Hund09397' => 'sun', 'Hund19356' => 'sun', 'Hund19357' => 'sun', 'Hund25302' => 'sun', 'Lalb_Chr05g0217361' => 'lal', 'Lalb_Chr12g0201301' => 'lal', 'Lalb_Chr13g0298011' => 'lal', 'Lalb_Chr14g0363561' => 'lal', 'Lalb_Chr20g0113961' => 'lal', 'Lj1A869T79' => 'lonja', 'Lj2g0003362' => 'lja', 'Lj2g0025756' => 'lja', 'Lj4g0005128' => 'lja', 'Lj4g0024955' => 'lja', 'Lj4g0027943' => 'lja', 'Lj5A802T82' => 'lonja', 'Lj5C119T11' => 'lonja', 'Lj6C798T16' => 'lonja', 'Lj6g0022720' => 'lja', 'Lj9C455T6' => 'lonja', 'Lsat_1_v5_gn_1_27861' => 'lsa', 'Lsat_1_v5_gn_4_74400' => 'lsa', 'Lsat_1_v5_gn_4_7920' => 'lsa', 'Lsat_1_v5_gn_4_7940' => 'lsa', 'Lsat_1_v5_gn_5_17500' => 'lsa', 'Lsat_1_v5_gn_5_5161' => 'lsa', 'Lsat_1_v5_gn_5_80920' => 'lsa', 'Lsat_1_v5_gn_7_109061' => 'lsa', 'Lsat_1_v5_gn_7_57441' => 'lsa', 'Lsat_1_v5_gn_8_65420' => 'lsa', 'Manes.01G194300' => 'mes', 'Manes.02G223100' => 'mes', 'Manes.03G126600' => 'mes', 'Manes.05G093500' => 'mes', 'Manes.06G099400' => 'mes', 'Manes.14G071700' => 'mes', 'Manes.15G073600' => 'mes', 'Mapoly0121s0024' => 'mpo', 'MBI02_g28335_MAGBIO' => 'mbi', 'MBI13_g33567_MAGBIO' => 'mbi', 'MBI15_g14834_MAGBIO' => 'mbi', 'MCO06G013' => 'mco', 'MD03G1206600' => 'mdo', 'MD06G1183000' => 'mdo', 'MD11G1222000' => 'mdo', 'MD13G1084500' => 'mdo', 'MD13G1232000' => 'mdo', 'MD14G1188900' => 'mdo', 'MD16G1083600' => 'mdo', 'MD16G1236800' => 'mdo', 'MD16G1236900' => 'mdo', 'Medtr3g050060' => 'mtr', 'Medtr4g010610' => 'mtr', 'Medtr4g107110' => 'mtr', 'Medtr5g036950' => 'mtr', 'Medtr6g093150' => 'mtr', 'MELO3C009998.2' => 'cme', 'MELO3C017132.2' => 'cme', 'MELO3C018075.2' => 'cme', 'MELO3C026509.2' => 'cme', 'Migut.D01895' => 'egut', 'Migut.H01841' => 'egut', 'Migut.I00078' => 'egut', 'Migut.I00079' => 'egut', 'Migut.J00844' => 'egut', 'Migut.L01375' => 'egut', 'MSTRG.14429' => 'ama', 'MSTRG.19400' => 'ama', 'MSTRG.23076' => 'ama', 'MSTRG.4392' => 'ama', 'MSTRG.5962' => 'ama', 'MSTRG.648' => 'ama', 'MSTRG.7850' => 'ama', 'MSTRG.9659' => 'ama', 'Nitab4.5_0000026g0310' => 'nta', 'Nitab4.5_0000170g0070' => 'nta', 'Nitab4.5_0000642g0230' => 'nta', 'Nitab4.5_0001030g0120' => 'nta', 'Nitab4.5_0001393g0200' => 'nta', 'Nitab4.5_0002875g0060' => 'nta', 'Nitab4.5_0003139g0090' => 'nta', 'Nitab4.5_0005048g0060' => 'nta', 'Nitab4.5_0007178g0030' => 'nta', 'Nitab4.5_0008162g0030' => 'nta', 'Nn1g03581' => 'nnu', 'Nn1g07106' => 'nnu', 'Nn3g17052' => 'nnu', 'Nn3g17921' => 'nnu', 'Nn4g22959' => 'nnu', 'Nn6g34554' => 'nnu', 'Nn8g41147' => 'nnu', 'Oeu000962.1' => 'oeu', 'Oeu001975.1' => 'oeu', 'Oeu015870.1' => 'oeu', 'Oeu016268.1' => 'oeu', 'Oeu016314.1' => 'oeu', 'Oeu020659.1' => 'oeu', 'Oeu032449.1' => 'oeu', 'Oeu038932.1' => 'oeu', 'Oeu041311.1' => 'oeu', 'Oeu041593.1' => 'oeu', 'Oeu042325.2' => 'oeu', 'Oeu042921.1' => 'oeu', 'Oeu044535.1' => 'oeu', 'Oeu046757.2' => 'oeu', 'Oeu047861.1' => 'oeu', 'Oeu062601.1' => 'oeu', 'Os02g0739900' => 'osa', 'Os06g0244700' => 'osa', 'Os07g0520400' => 'osa', 'Os09g0560000' => 'osa', 'Peaxi162Scf00017g02219' => 'pax', 'Peaxi162Scf00387g00313' => 'pax', 'Peaxi162Scf00450g00847' => 'pax', 'Peaxi162Scf00474g00525' => 'pax', 'Peaxi162Scf00828g00210' => 'pax', 'PGR044G0190' => 'pgr', 'PGR044G2393' => 'pgr', 'PGR083G2090' => 'pgr', 'PGR102G2108' => 'pgr', 'PGSC0003DMG400013571' => 'stu', 'PGSC0003DMG400014424' => 'stu', 'PGSC0003DMG400022634' => 'stu', 'PGSC0003DMG400024575' => 'stu', 'Phvul.002G078100' => 'pvu', 'Phvul.003G196100' => 'pvu', 'Phvul.004G178400' => 'pvu', 'Phvul.006G039200' => 'pvu', 'Phvul.009G183200' => 'pvu', 'Potri.001G421200' => 'ptr', 'Potri.006G079500' => 'ptr', 'Potri.008G192100' => 'ptr', 'Potri.010G038900' => 'ptr', 'Potri.011G136700' => 'ptr', 'Potri.012G074400' => 'ptr', 'Potri.015G069200' => 'ptr', 'Pp3c20_6790' => 'ppa', 'Pp3c23_19130' => 'ppa', 'Pp3c24_6410' => 'ppa', 'Pp3c8_14290' => 'ppa', 'Prupe.1G063300' => 'ppe', 'Prupe.1G262400' => 'ppe', 'Prupe.1G458100' => 'ppe', 'Prupe.4G209400' => 'ppe', 'Prupe.5G181300' => 'ppe', 'Psat1g051600' => 'psa', 'Psat2g114640' => 'psa', 'Psat4g055280' => 'psa', 'Psat5g183280' => 'psa', 'Psat6g145880' => 'psa', 'PSO063G0310' => 'pso', 'PSO161G0030' => 'pso', 'PSO170G0491' => 'pso', 'PSO210G2593' => 'pso', 'PSO478G2768' => 'pso', 'PSO541G6243' => 'pso', 'PSO591G0327' => 'pso', 'PSO675G6898' => 'pso', 'PSO832G0782' => 'pso', 'PSO832G2245' => 'pso', 'QL03p067468' => 'qlo', 'QL08p011855' => 'qlo', 'QL10p013932' => 'qlo', 'QL11p008075' => 'qlo', 'RcHm_v2.0_Chr4g0397171' => 'rch', 'RcHm_v2.0_Chr4g0444931' => 'rch', 'RcHm_v2.0_Chr5g0038291' => 'rch', 'RcHm_v2.0_Chr7g0179911' => 'rch', 'Rhsim03G0270200' => 'rsi', 'Rhsim03G0270400' => 'rsi', 'Rhsim04G0002200' => 'rsi', 'Rhsim05G0215300' => 'rsi', 'Rhsim08G0164300' => 'rsi', 'Rhsim12G0126900' => 'rsi', 'Rhsim12G0160800' => 'rsi', 'RhsimUnG0252200' => 'rsi', 'Sabra06G0060100' => 'sbr', 'Sabra08G0145600' => 'sbr', 'Sabra10G0027500' => 'sbr', 'Sabra11G0122700' => 'sbr', 'Sabra12G0052800' => 'sbr', 'Sabra12G0052900' => 'sbr', 'Sabra15G0093600' => 'sbr', 'Sabra16G0286000' => 'sbr', 'SalBow2G1219' => 'sbo', 'SalBow2G2287' => 'sbo', 'SalBow3G0043' => 'sbo', 'SalBow5G0903' => 'sbo', 'SalBow5G1875' => 'sbo', 'SalBow6G6089' => 'sbo', 'Sc03g0008750' => 'sci', 'Sc04g0002210' => 'sci', 'Sc11g0001510' => 'sci', 'Sc12g0005580' => 'sci', 'Sc23g0004380' => 'sci', 'Sed0005399' => 'sed', 'Sed0008924' => 'sed', 'Sed0017175' => 'sed', 'Sed0017439' => 'sed', 'Sed0024641' => 'sed', 'SEGI_18148' => 'sgi', 'SEGI_21255' => 'sgi', 'SEGI_30691' => 'sgi', 'SGA_v2.0_scaffold114G31860' => 'sas', 'SGA_v2.0_scaffold166G38310' => 'sas', 'SGA_v2.0_scaffold56G20086' => 'sas', 'SGA_v2.0_scaffold8G04302' => 'sas', 'SGA_v2.0_scaffold9G05062' => 'sas', 'SHI31839' => 'shi', 'SHI31840' => 'shi', 'SMO139G0049' => 'smo', 'SMO147G0001' => 'smo', 'Solyc03g113680.4' => 'sly', 'Solyc05g006550.4' => 'sly', 'Solyc07g042580.3' => 'sly', 'Solyc10g006350.3' => 'sly', 'Sopen03g032730' => 'spe', 'Sopen05g002500' => 'spe', 'Sopen07g022270' => 'spe', 'Sopen10g002300' => 'spe', 'Sp1g21560' => 'spa', 'Sp1g37630' => 'spa', 'Sp2g04720' => 'spa', 'Sp2g25770' => 'spa', 'Sp7g16580' => 'spa', 'Sp7g25030' => 'spa', 'TAR371G0402' => 'tar', 'TAR374G1378' => 'tar', 'TAR622G1363' => 'tar', 'TAR626G0450' => 'tar', 'TAR627G0016' => 'tar', 'TAR627G0121' => 'tar', 'TAR629G0333' => 'tar', 'TAR629G1358' => 'tar', 'THA.LOC104808819' => 'tha', 'THA.LOC104815308' => 'tha', 'THA.LOC104817657' => 'tha', 'THA.LOC104817878' => 'tha', 'THA.LOC104818505' => 'tha', 'THA.LOC104819432' => 'tha', 'THA.LOC104819710' => 'tha', 'THA.LOC104821446' => 'tha', 'THA.LOC104822071' => 'tha', 'Thecc.02G238300' => 'tca', 'Thecc.03G001800' => 'tca', 'Thecc.07G043700' => 'tca', 'Thecc.09G200900' => 'tca', 'Thhalv10003887m.g' => 'esa', 'Thhalv10007045m.g' => 'esa', 'Thhalv10011243m.g' => 'esa', 'Thhalv10023992m.g' => 'esa', 'Thhalv10024370m.g' => 'esa', 'Thhalv10024428m.g' => 'esa', 'Thhalv10027020m.g' => 'esa', 'TPR.G16589' => 'tpr', 'TPR.G21353' => 'tpr', 'TPR.G26713' => 'tpr', 'TPR.G38409' => 'tpr', 'TWI15G0950' => 'twi', 'TWI18G0632' => 'twi', 'TWI34G1969' => 'twi', 'TWI36G1165' => 'twi', 'TWI38G0391' => 'twi', 'TWI39G0932' => 'twi', 'TWI75G0273' => 'twi', 'TWI81G0247' => 'twi', 'unitig_0.g1453' => 'ugi', 'unitig_26.g8792' => 'ugi', 'unitig_27.g24762' => 'ugi', 'unitig_578.g16765' => 'ugi', 'unitig_747.g21162' => 'ugi', 'unitig_8.g4577' => 'ugi', 'vmacro09734' => 'vma', 'vmacro16301' => 'vma', 'vmacro16580' => 'vma', 'vmacro19346' => 'vma', 'vmacro22704' => 'vma', 'vmacro22705' => 'vma', 'vmacro22706' => 'vma', 'VMungo0464G0816' => 'vmu', 'VMungo0540G1730' => 'vmu', 'VMungo1215G0131' => 'vmu', 'VMungo1215G1294' => 'vmu', 'VMungo1309G1811' => 'vmu', 'Zm00001eb023470' => 'zma', 'Zm00001eb106100' => 'zma', 'Zm00001eb140110' => 'zma', 'Zm00001eb164070' => 'zma', 'Zm00001eb219130' => 'zma', 'Zm00001eb224330' => 'zma', 'Zm00001eb228880' => 'zma', 'Zm00001eb240800' => 'zma', 'Zm00001eb247910' => 'zma', 'Zm00001eb254080' => 'zma', 'Zm00001eb277980' => 'zma', 'Zm00001eb280060' => 'zma', 'Zm00001eb300020' => 'zma', 'Zm00001eb320350' => 'zma', 'Zm00001eb321810' => 'zma', 'Zm00001eb322820' => 'zma', 'Zm00001eb324350' => 'zma', 'Zm00001eb371780' => 'zma', 'Zm00001eb377230' => 'zma' ) $gf_id = 'HOM05D000905' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000905' ) $data_identifier = 'HOM05D000905' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377230' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1